Package: ReviewR 2.3.10

David Mayer

ReviewR: A Light-Weight, Portable Tool for Reviewing Individual Patient Records

A portable Shiny tool to explore patient-level electronic health record data and perform chart review in a single integrated framework. This tool supports browsing clinical data in many different formats including multiple versions of the 'OMOP' common data model as well as the 'MIMIC-III' data model. In addition, chart review information is captured and stored securely via the Shiny interface in a 'REDCap' (Research Electronic Data Capture) project using the 'REDCap' API. See the 'ReviewR' website for additional information, documentation, and examples.

Authors:Laura Wiley [aut], Luke Rasmussen [aut], David Mayer [cre, aut], The Wiley Lab [cph, fnd]

ReviewR_2.3.10.tar.gz
ReviewR_2.3.10.zip(r-4.7)ReviewR_2.3.10.zip(r-4.6)ReviewR_2.3.10.zip(r-4.5)
ReviewR_2.3.10.tgz(r-4.6-any)ReviewR_2.3.10.tgz(r-4.5-any)
ReviewR_2.3.10.tar.gz(r-4.7-any)ReviewR_2.3.10.tar.gz(r-4.6-any)
ReviewR_2.3.10.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ReviewR/json (API)

# Install 'ReviewR' in R:
install.packages('ReviewR', repos = c('https://thewileylab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/thewileylab/reviewr/issues

Pkgdown/docs site:https://reviewr.thewileylab.org

Datasets:

On CRAN:

Conda:

6.35 score 25 stars 7 scripts 354 downloads 1 mentions 1 exports 105 dependencies

Last updated from:0d8264ffd0. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK188
source / vignettesOK211
linux-release-x86_64OK185
macos-release-arm64OK147
macos-oldrel-arm64OK183
windows-develOK150
windows-releaseOK120
windows-oldrelOK130
wasm-releaseOK159

Exports:run_app

Dependencies:askpassattemptbackportsbase64encbigrquerybitbit64blobbriobslibcachemcheckmatechronclicliprclockcodetoolscommonmarkconfigcpp11crayoncrosstalkcurlDBIdbplyrdigestdplyrDTevaluatefastmapfilelockfontawesomefreshfsgarglegenericsgetPassgluegolemhighrhmshtmltoolshtmlwidgetshttpuvhttrjquerylibjsonliteknitrlabelVectorlaterlazyevallifecyclelubridatemagrittrmemoisemimenanoparquetopensslotelpillarpkgconfigprettyunitsprogresspromisespurrrR6rapidjsonrrappdirsRcppreadrredcapAPIREDCapRrlangrmarkdownRPostgresRSQLiterstudioapisasssheltershinyshinycssloadersshinydashboardshinydashboardPlusshinyjsshinyWidgetssnakecasesodiumsourcetoolsstringistringrsystibbletidyrtidyselecttimechangetinytextzdbutf8vctrsvroomwaiterwithrxfunxtableyaml

Perform A Chart Review
Getting Started | Patient Search | Chart Review | Subject Header | Jump to Subject ID | Patient Chart | REDCap Instrument | Keyboard Navigation
Rendered fromusage_perform_chart_review.Rmdusingknitr::rmarkdown

Last update: 2023-08-31
Started: 2021-01-06

Shiny Server Deployment
Overview | Getting Started | Disclaimer | Suggested Reading | Obtain a Domain | Shiny Server Setup | Install Shiny Server Dependencies | Install Shiny Server | Configuring NGINX to Reverse Proxy Shiny Server | Install NGINX | Configure NGINX for use with Shiny Server | Securing Shiny Server URL with Let's Encrypt | Deploy ReviewR
Rendered fromdeploy_server.Rmdusingknitr::rmarkdown

Last update: 2023-08-31
Started: 2021-01-06

Support a New Data Model
Overview | ReviewR Data Model Support | Data Model Detection | Schema Files | Data Model Display | Table Function Naming Convention | Adding Support for a New Data Model | Getting Started | Required Information | How to Add a New Data Model | Developing/Testing | Finishing up
Rendered fromcustomize_support_new_data_model.Rmdusingknitr::rmarkdown

Last update: 2023-08-31
Started: 2021-03-24

Support a New Relational Database Management System
Overview | Database Modules | Developing a Database Module for ReviewR | Getting Started | Start Developing! | General Module Structure | Requirements | UI Function | Example 'Connect' Server Logic | Example 'Disconnect' Server Logic | Other Considerations | Important | Finishing up | ReviewR Database Module Template
Rendered fromcustomize_support_new_rdbms.Rmdusingknitr::rmarkdown

Last update: 2023-08-31
Started: 2021-01-06

Google BigQuery Deployment
Overview | Local Deployment | Server Deployment
Rendered fromdeploy_bigquery.Rmdusingknitr::rmarkdown

Last update: 2021-04-01
Started: 2021-01-06

Connect to Patient Record Database
Getting Started | Connect to Patient Database | Google BigQuery | PostgreSQL | Demo SQLite Database | Other Relational Database Systems | Data Model Detection | Next Steps
Rendered fromusage_connect_to_record_database.Rmdusingknitr::rmarkdown

Last update: 2021-03-24
Started: 2021-01-06

Docker Deployment
Overview | Docker Desktop | Install Docker Desktop | Run ReviewR from Docker | Download | Build ReviewR | Run ReviewR | Server | Docker Installation | Prerequisites | Docker Configuration (Optional) | Build Shiny Server Container | Configuring NGINX to Reverse Proxy ReviewR Docker Container | Configure nginx | Securing Docker Container with Let's Encrypt
Rendered fromdeploy_docker.Rmdusingknitr::rmarkdown

Last update: 2021-02-01
Started: 2021-01-06

Connect to REDCap
Getting Started | Create a REDCap Project | Design REDCap Instrument(s) | Required Field to Include | Suggested Field to Include | Supported Instrument Types | Supported Field Types | Connect and Configure REDCap in ReviewR | Connect to REDCap Project | Configure REDCap | Disconnect/Reconfigure | Next Step
Rendered fromusage_connect_to_redcap.Rmdusingknitr::rmarkdown

Last update: 2021-01-08
Started: 2021-01-06

Local Deployment
Overview | Installation | Usage
Rendered fromdeploy_local.Rmdusingknitr::rmarkdown

Last update: 2021-01-06
Started: 2021-01-06

Readme and manuals

Help Manual

Help pageTopics
Database Table Function: All Patients Table Templatedb_function_all_patients_table_template
Database Table Function: Subject Table Templatedb_function_subject_table_template
Database Module Templatedb_module_template
Develop Data Model Table Functionsdev_add_data_model
Develop A Database Moduledev_add_database_module
REDCap Survey Completeredcap_survey_complete
REDCap Widget Mapredcap_widget_map
Run Applicationrun_app
Supported Data Model Schemassupported_data_models